nipype.interfaces.slicer.quantification.changequantification module

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class nipype.interfaces.slicer.quantification.changequantification.IntensityDifferenceMetric(command=None, terminal_output=None, write_cmdline=False, **inputs)

Bases: SEMLikeCommandLine

Wrapped executable: IntensityDifferenceMetric.

title:

Intensity Difference Change Detection (FAST)

category:

Quantification.ChangeQuantification

description:

Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.

version: 0.1

contributor: Andrey Fedorov

acknowledgements:

Optional Inputs

argsa string

Additional parameters to the command. Maps to a command-line argument: %s.

baselineSegmentationVolumea pathlike object or string representing an existing file

Label volume that contains segmentation of the structure of interest in the baseline volume. Maps to a command-line argument: %s (position: -3).

baselineVolumea pathlike object or string representing an existing file

Baseline volume to be compared to. Maps to a command-line argument: %s (position: -4).

changingBandSizean integer

How far (in mm) from the boundary of the segmentation should the intensity changes be considered. Maps to a command-line argument: --changingBandSize %d.

environa dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’

Environment variables. (Nipype default value: {})

followupVolumea pathlike object or string representing an existing file

Followup volume to be compare to the baseline. Maps to a command-line argument: %s (position: -2).

outputVolumea boolean or a pathlike object or string representing a file

Output volume to keep the results of change quantification. Maps to a command-line argument: %s (position: -1).

reportFileNamea boolean or a pathlike object or string representing a file

Report file name. Maps to a command-line argument: --reportFileName %s.

sensitivityThresholda float

This parameter should be between 0 and 1, and defines how sensitive the metric should be to the intensity changes. Maps to a command-line argument: --sensitivityThreshold %f.

Outputs

outputVolumea pathlike object or string representing an existing file

Output volume to keep the results of change quantification.

reportFileNamea pathlike object or string representing an existing file

Report file name.